GA4GH Variation Representation Specification
1.1
Introduction
Terminology & Information Model
Schema
Implementation Guide
Releases
Appendices
Relationship of VRS to existing standards
Associating Annotations with VRS Objects
Design Decisions
Development Process
Future Plans
Proposal for GA4GH-wide Computed Identifier Standard
Implementations
Truncated Digest Timing and Collision Analysis
Glossary
GA4GH Variation Representation Specification
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Appendices
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Appendices
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Relationship of VRS to existing standards
Associating Annotations with VRS Objects
Design Decisions
Variation Rather than Variant
Allele Rather than Variant
Implementations should normalize
Alleles are Fully Justified
Interbase Coordinates
Modelling Language
Serialization Strategy
Not using External Chromosome Declarations
Development Process
Release Cycle
Leadership
Future Plans
Overview
Intervals and Locations
State Classes
Variation Classes
Rule-based Variation
Proposal for GA4GH-wide Computed Identifier Standard
Background
Proposal
Type Prefixes
Administration
Implementations
Libraries
Applications and Web Services
Truncated Digest Timing and Collision Analysis
Conclusions
Digest Timing
Collision Analysis
Choosing a digest size
Glossary
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